Detailed information of SNP:
|
SNP ID:
sf1204843317(Gbrowse)
Chromosome: chr12 Position: 4843317 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 97.00% | 3.00% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 482 | 95.02% | 4.98% |
| Aus | 63 | 73.02% | 26.98% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 330 | 97.88% | 2.12% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 60 | 78.33% | 21.67% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204843317 | A->T | INTERGENIC | None |