Detailed information of SNP:
|
SNP ID:
sf1204925509(Gbrowse)
Chromosome: chr12 Position: 4925509 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 53.33% | 46.67% |
| All Indica | 790 | 91.14% | 8.86% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 370 | 89.19% | 10.81% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204925509 | C->T | LOC_Os12g09400(LOC_Os12g09400.1) | Non-Synonymous SNP |