Detailed information of SNP:
|
SNP ID:
sf1204929668(Gbrowse)
Chromosome: chr12 Position: 4929668 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 62.62% | 37.38% |
| All Indica | 790 | 96.58% | 3.42% |
| All Japonica | 497 | 8.45% | 91.55% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 207 | 94.20% | 5.80% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204929668 | A->G | INTERGENIC | None |