Detailed information of SNP:
|
SNP ID:
sf1204985520(Gbrowse)
Chromosome: chr12 Position: 4985520 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 52.70% | 47.30% |
| All Indica | 789 | 91.25% | 8.75% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 64 | 7.81% | 92.19% |
| Indica I | 369 | 88.89% | 11.11% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204985520 | A->G | LOC_Os12g09500(LOC_Os12g09500.1) | INTRON |