Detailed information of SNP:
|
SNP ID:
sf1205141672(Gbrowse)
Chromosome: chr12 Position: 5141672 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1312 | 89.63% | 10.37% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 397 | 66.75% | 33.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 249 | 52.21% | 47.79% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 79.37% | 20.63% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205141672 | G->T | LOC_Os12g09739(LOC_Os12g09739.1) | INTRON |