Detailed information of SNP:
|
SNP ID:
sf1205230977(Gbrowse)
Chromosome: chr12 Position: 5230977 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1261 | 54.48% | 45.52% |
| All Indica | 662 | 20.24% | 79.76% |
| All Japonica | 493 | 98.17% | 1.83% |
| Aus | 54 | 59.26% | 40.74% |
| Indica I | 310 | 19.68% | 80.32% |
| Indica II | 174 | 16.09% | 83.91% |
| Indica Intermediate | 178 | 25.28% | 74.72% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205230977 | A->C | LOC_Os12g09860(LOC_Os12g09860.1) | Synonymous |