Detailed information of SNP:
|
SNP ID:
sf1205241042(Gbrowse)
Chromosome: chr12 Position: 5241042 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1320 | 95.68% | 4.32% |
| All Indica | 703 | 92.03% | 7.97% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 332 | 96.39% | 3.61% |
| Indica II | 188 | 89.89% | 10.11% |
| Indica Intermediate | 183 | 86.34% | 13.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205241042 | A->G | INTERGENIC | None |