Detailed information of SNP:
|
SNP ID:
sf1205241072(Gbrowse)
Chromosome: chr12 Position: 5241072 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 53.85% | 46.15% |
| All Indica | 771 | 88.85% | 11.15% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 359 | 89.69% | 10.31% |
| Indica II | 205 | 87.32% | 12.68% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205241072 | C->T | INTERGENIC | None |