Detailed information of SNP:
|
SNP ID:
sf1205253518(Gbrowse)
Chromosome: chr12 Position: 5253518 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1328 | 60.84% | 39.16% |
| All Indica | 721 | 32.73% | 67.27% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 57 | 57.89% | 42.11% |
| Indica I | 326 | 33.44% | 66.56% |
| Indica II | 205 | 32.20% | 67.80% |
| Indica Intermediate | 190 | 32.11% | 67.89% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205253518 | C->T | INTERGENIC | None |