Detailed information of SNP:
|
SNP ID:
sf1205261273(Gbrowse)
Chromosome: chr12 Position: 5261273 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1351 | 57.66% | 42.34% |
| All Indica | 756 | 95.11% | 4.89% |
| All Japonica | 492 | 2.85% | 97.15% |
| Aus | 51 | 56.86% | 43.14% |
| Indica I | 355 | 96.34% | 3.66% |
| Indica II | 204 | 94.12% | 5.88% |
| Indica Intermediate | 197 | 93.91% | 6.09% |
| Temperate Japonica | 332 | 3.01% | 96.99% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205261273 | G->C | INTERGENIC | None |