Detailed information of SNP:
|
SNP ID:
sf1205316181(Gbrowse)
Chromosome: chr12 Position: 5316181 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 52.61% | 47.39% |
| All Indica | 778 | 21.72% | 78.28% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 364 | 21.43% | 78.57% |
| Indica II | 207 | 23.19% | 76.81% |
| Indica Intermediate | 207 | 20.77% | 79.23% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205316181 | A->G | INTERGENIC | None |