Detailed information of SNP:
|
SNP ID:
sf1205316484(Gbrowse)
Chromosome: chr12 Position: 5316484 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1295 | 73.51% | 26.49% |
| All Indica | 681 | 51.40% | 48.60% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 319 | 48.59% | 51.41% |
| Indica II | 189 | 55.56% | 44.44% |
| Indica Intermediate | 173 | 52.02% | 47.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205316484 | G->T | LOC_Os12g10040(LOC_Os12g10040.1) | Non-Synonymous SNP |