Detailed information of SNP:
|
SNP ID:
sf1205321137(Gbrowse)
Chromosome: chr12 Position: 5321137 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1285 | 73.31% | 26.69% |
| All Indica | 674 | 54.30% | 45.70% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 62 | 74.19% | 25.81% |
| Indica I | 308 | 46.75% | 53.25% |
| Indica II | 178 | 66.29% | 33.71% |
| Indica Intermediate | 188 | 55.32% | 44.68% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205321137 | G->A | INTERGENIC | None |