Detailed information of SNP:
|
SNP ID:
sf1205329031(Gbrowse)
Chromosome: chr12 Position: 5329031 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 51.56% | 48.44% |
| All Indica | 793 | 17.65% | 82.35% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 371 | 14.29% | 85.71% |
| Indica II | 213 | 24.41% | 75.59% |
| Indica Intermediate | 209 | 16.75% | 83.25% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205329031 | T->C | LOC_Os12g10060(LOC_Os12g10060.1) | INTRON |