Detailed information of SNP:
|
SNP ID:
sf1205330749(Gbrowse)
Chromosome: chr12 Position: 5330749 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 87.55% | 12.45% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 493 | 65.72% | 34.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 55.22% | 44.78% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205330749 | T->C | LOC_Os12g10070(LOC_Os12g10070.1) | Synonymous |