Detailed information of SNP:
|
SNP ID:
sf1205350731(Gbrowse)
Chromosome: chr12 Position: 5350731 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 96.12% | 3.88% |
| All Indica | 771 | 93.26% | 6.74% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 96.08% | 3.92% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 204 | 90.69% | 9.31% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205350731 | C->T | INTERGENIC | None |