Detailed information of SNP:
|
SNP ID:
sf1205367446(Gbrowse)
Chromosome: chr12 Position: 5367446 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1330 | 72.11% | 27.89% |
| All Indica | 720 | 51.11% | 48.89% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 60 | 75.00% | 25.00% |
| Indica I | 332 | 55.72% | 44.28% |
| Indica II | 195 | 40.51% | 59.49% |
| Indica Intermediate | 193 | 53.89% | 46.11% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205367446 | A->G | INTERGENIC | None |