Detailed information of SNP:
|
SNP ID:
sf1205368556(Gbrowse)
Chromosome: chr12 Position: 5368556 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1381 | 96.74% | 3.26% |
| All Indica | 765 | 94.77% | 5.23% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 363 | 96.69% | 3.31% |
| Indica II | 201 | 92.04% | 7.96% |
| Indica Intermediate | 201 | 94.03% | 5.97% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205368556 | T->C | INTERGENIC | None |