Detailed information of SNP:
|
SNP ID:
sf1205371309(Gbrowse)
Chromosome: chr12 Position: 5371309 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 96.02% | 3.98% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 441 | 89.12% | 10.88% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 306 | 88.56% | 11.44% |
| Tropical Japonica | 79 | 93.67% | 6.33% |
| Japonica Intermediate | 56 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205371309 | C->T | INTERGENIC | None |