Detailed information of SNP:
|
SNP ID:
sf1205372963(Gbrowse)
Chromosome: chr12 Position: 5372963 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1219 | 59.97% | 40.03% |
| All Indica | 626 | 32.11% | 67.89% |
| All Japonica | 488 | 96.11% | 3.89% |
| Aus | 55 | 41.82% | 58.18% |
| Indica I | 287 | 36.93% | 63.07% |
| Indica II | 173 | 24.86% | 75.14% |
| Indica Intermediate | 166 | 31.33% | 68.67% |
| Temperate Japonica | 329 | 98.48% | 1.52% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205372963 | G->A | INTERGENIC | None |