Detailed information of SNP:
|
SNP ID:
sf1205429958(Gbrowse)
Chromosome: chr12 Position: 5429958 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 52.73% | 47.27% |
| All Indica | 792 | 25.38% | 74.62% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 371 | 14.82% | 85.18% |
| Indica II | 212 | 44.81% | 55.19% |
| Indica Intermediate | 209 | 24.40% | 75.60% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205429958 | C->T | INTERGENIC | None |