Detailed information of SNP:
|
SNP ID:
sf1205448226(Gbrowse)
Chromosome: chr12 Position: 5448226 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 98.65% | 1.35% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 485 | 96.29% | 3.71% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 87 | 89.66% | 10.34% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205448226 | G->T | INTERGENIC | None |