Detailed information of SNP:
|
SNP ID:
sf1205462927(Gbrowse)
Chromosome: chr12 Position: 5462927 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 57.68% | 42.32% |
| All Indica | 789 | 91.89% | 8.11% |
| All Japonica | 494 | 5.47% | 94.53% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 370 | 93.51% | 6.49% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 207 | 87.92% | 12.08% |
| Temperate Japonica | 333 | 4.80% | 95.20% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205462927 | C->T | INTERGENIC | None |