Detailed information of SNP:
|
SNP ID:
sf1205464361(Gbrowse)
Chromosome: chr12 Position: 5464361 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 54.05% | 45.95% |
| All Indica | 799 | 88.86% | 11.14% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205464361 | G->A | INTERGENIC | None |