Detailed information of SNP:
|
SNP ID:
sf1205511055(Gbrowse)
Chromosome: chr12 Position: 5511055 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.80% | 45.20% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205511055 | G->A | LOC_Os12g10410(LOC_Os12g10410.1) | INTRON |