Detailed information of SNP:
|
SNP ID:
sf1205520552(Gbrowse)
Chromosome: chr12 Position: 5520552 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1328 | 92.70% | 7.30% |
| All Indica | 708 | 86.72% | 13.28% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 309 | 79.29% | 20.71% |
| Indica II | 205 | 94.63% | 5.37% |
| Indica Intermediate | 194 | 90.21% | 9.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205520552 | C->T | INTERGENIC | None |