Detailed information of SNP:
|
SNP ID:
sf1205532132(Gbrowse)
Chromosome: chr12 Position: 5532132 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 71.11% | 28.89% |
| All Indica | 789 | 50.57% | 49.43% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 71.97% | 28.03% |
| Indica II | 209 | 19.14% | 80.86% |
| Indica Intermediate | 209 | 44.02% | 55.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205532132 | G->A | LOC_Os12g10440(LOC_Os12g10440.1) | INTRON |