Detailed information of SNP:
|
SNP ID:
sf1205532510(Gbrowse)
Chromosome: chr12 Position: 5532510 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 87.65% | 12.35% |
| All Indica | 757 | 78.07% | 21.93% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 350 | 67.71% | 32.29% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 197 | 83.25% | 16.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205532510 | G->T | LOC_Os12g10440(LOC_Os12g10440.1) | INTRON |