Detailed information of SNP:
|
SNP ID:
sf1205540267(Gbrowse)
Chromosome: chr12 Position: 5540267 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 55.68% | 44.32% |
| All Indica | 795 | 94.09% | 5.91% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 54 | 9.26% | 90.74% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205540267 | T->C | INTERGENIC | None |