Detailed information of SNP:
|
SNP ID:
sf1205554257(Gbrowse)
Chromosome: chr12 Position: 5554257 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 65.05% | 34.95% |
| All Indica | 768 | 38.41% | 61.59% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 364 | 36.54% | 63.46% |
| Indica II | 200 | 38.50% | 61.50% |
| Indica Intermediate | 204 | 41.67% | 58.33% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205554257 | C->T | INTERGENIC | None |