Detailed information of SNP:
|
SNP ID:
sf1205554279(Gbrowse)
Chromosome: chr12 Position: 5554279 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 50.39% | 49.61% |
| All Indica | 791 | 14.16% | 85.84% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 373 | 8.04% | 91.96% |
| Indica II | 211 | 21.33% | 78.67% |
| Indica Intermediate | 207 | 17.87% | 82.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205554279 | G->T | INTERGENIC | None |