Detailed information of SNP:
|
SNP ID:
sf1205580575(Gbrowse)
Chromosome: chr12 Position: 5580575 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 94.18% | 5.82% |
| All Indica | 789 | 91.63% | 8.37% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 367 | 87.19% | 12.81% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205580575 | G->A | INTERGENIC | None |