Detailed information of SNP:
|
SNP ID:
sf1205580982(Gbrowse)
Chromosome: chr12 Position: 5580982 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 91.90% | 8.10% |
| All Indica | 799 | 87.73% | 12.27% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205580982 | A->G | INTERGENIC | None |