Detailed information of SNP:
|
SNP ID:
sf1205657670(Gbrowse)
Chromosome: chr12 Position: 5657670 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 54.55% | 45.45% |
| All Indica | 759 | 23.98% | 76.02% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 363 | 29.20% | 70.80% |
| Indica II | 200 | 15.50% | 84.50% |
| Indica Intermediate | 196 | 22.96% | 77.04% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205657670 | C->T | LOC_Os12g10610(LOC_Os12g10610.1) | INTRON |