Detailed information of SNP:
|
SNP ID:
sf1205660760(Gbrowse)
Chromosome: chr12 Position: 5660760 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.33% | 44.67% |
| All Indica | 797 | 90.59% | 9.41% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205660760 | G->A | INTERGENIC | None |