Detailed information of SNP:
|
SNP ID:
sf1205662806(Gbrowse)
Chromosome: chr12 Position: 5662806 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1335 | 51.54% | 48.46% |
| All Indica | 741 | 89.61% | 10.39% |
| All Japonica | 492 | 0.41% | 99.59% |
| Aus | 51 | 11.76% | 88.24% |
| Indica I | 342 | 89.47% | 10.53% |
| Indica II | 201 | 89.55% | 10.45% |
| Indica Intermediate | 198 | 89.90% | 10.10% |
| Temperate Japonica | 330 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 38 | 42.11% | 57.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205662806 | A->G | INTERGENIC | None |