Detailed information of SNP:
SNP ID:
sf1205698568(Gbrowse)
Chromosome: chr12 Position: 5698568 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1414 | 63.15% | 36.85% |
All Indica | 794 | 96.85% | 3.15% |
All Japonica | 497 | 12.07% | 87.93% |
Aus | 67 | 56.72% | 43.28% |
Indica I | 374 | 97.86% | 2.14% |
Indica II | 210 | 95.71% | 4.29% |
Indica Intermediate | 210 | 96.19% | 3.81% |
Temperate Japonica | 335 | 16.12% | 83.88% |
Tropical Japonica | 94 | 3.19% | 96.81% |
Japonica Intermediate | 68 | 4.41% | 95.59% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1205698568 | A->C | INTERGENIC | None |