Detailed information of SNP:
|
SNP ID:
sf1205698568(Gbrowse)
Chromosome: chr12 Position: 5698568 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 63.15% | 36.85% |
| All Indica | 794 | 96.85% | 3.15% |
| All Japonica | 497 | 12.07% | 87.93% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 16.12% | 83.88% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205698568 | A->C | INTERGENIC | None |