Detailed information of SNP:
|
SNP ID:
sf1205698574(Gbrowse)
Chromosome: chr12 Position: 5698574 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 73.07% | 26.93% |
| All Indica | 791 | 54.11% | 45.89% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 72.12% | 27.88% |
| Indica II | 210 | 23.81% | 76.19% |
| Indica Intermediate | 208 | 52.40% | 47.60% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205698574 | T->C | INTERGENIC | None |