Detailed information of SNP:
SNP ID:
sf1205716942(Gbrowse)
Chromosome: chr12 Position: 5716942 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1411 | 62.01% | 37.99% |
All Indica | 794 | 96.60% | 3.40% |
All Japonica | 495 | 8.69% | 91.31% |
Aus | 67 | 56.72% | 43.28% |
Indica I | 374 | 98.13% | 1.87% |
Indica II | 212 | 96.23% | 3.77% |
Indica Intermediate | 208 | 94.23% | 5.77% |
Temperate Japonica | 333 | 11.71% | 88.29% |
Tropical Japonica | 94 | 3.19% | 96.81% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1205716942 | A->G | LOC_Os12g10680(LOC_Os12g10680.1) | INTRON |