Detailed information of SNP:
|
SNP ID:
sf1205716942(Gbrowse)
Chromosome: chr12 Position: 5716942 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 62.01% | 37.99% |
| All Indica | 794 | 96.60% | 3.40% |
| All Japonica | 495 | 8.69% | 91.31% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 333 | 11.71% | 88.29% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205716942 | A->G | LOC_Os12g10680(LOC_Os12g10680.1) | INTRON |