Detailed information of SNP:
|
SNP ID:
sf1205727866(Gbrowse)
Chromosome: chr12 Position: 5727866 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 86.00% | 14.00% |
| All Indica | 767 | 74.97% | 25.03% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 353 | 63.46% | 36.54% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 203 | 79.31% | 20.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205727866 | C->T | INTERGENIC | None |