Detailed information of SNP:
|
SNP ID:
sf1205729676(Gbrowse)
Chromosome: chr12 Position: 5729676 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 62.45% | 37.55% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 495 | 7.88% | 92.12% |
| Aus | 65 | 56.92% | 43.08% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 11.34% | 88.66% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 66 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205729676 | T->C | INTERGENIC | None |