Detailed information of SNP:
|
SNP ID:
sf1205755264(Gbrowse)
Chromosome: chr12 Position: 5755264 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.99% | 40.01% |
| All Indica | 798 | 94.74% | 5.26% |
| All Japonica | 496 | 7.66% | 92.34% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 334 | 11.08% | 88.92% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205755264 | T->C | INTERGENIC | None |