Detailed information of SNP:



SNP ID: sf1205787217(Gbrowse)

Chromosome: chr12

Position: 5787217
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1362 85.24% 14.76%
All Indica797 99.25% 0.75%
All Japonica446 57.40% 42.60%
Aus65 95.38% 4.62%
Indica I374 100.00% 0.00%
Indica II212 99.06% 0.94%
Indica Intermediate211 98.10% 1.90%
Temperate Japonica297 48.15% 51.85%
Tropical Japonica87 83.91% 16.09%
Japonica Intermediate62 64.52% 35.48%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 95.00% 5.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1205787217 T->C INTERGENIC None