Detailed information of SNP:
|
SNP ID:
sf1205787217(Gbrowse)
Chromosome: chr12 Position: 5787217 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1362 | 85.24% | 14.76% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 446 | 57.40% | 42.60% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 297 | 48.15% | 51.85% |
| Tropical Japonica | 87 | 83.91% | 16.09% |
| Japonica Intermediate | 62 | 64.52% | 35.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205787217 | T->C | INTERGENIC | None |