Detailed information of SNP:
|
SNP ID:
sf1205809359(Gbrowse)
Chromosome: chr12 Position: 5809359 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 84.33% | 15.67% |
| All Indica | 765 | 72.55% | 27.45% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 94.81% | 5.19% |
| Indica II | 202 | 31.68% | 68.32% |
| Indica Intermediate | 197 | 73.10% | 26.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205809359 | A->G | LOC_Os12g10800(LOC_Os12g10800.1) | INTRON |