Detailed information of SNP:
|
SNP ID:
sf1205809966(Gbrowse)
Chromosome: chr12 Position: 5809966 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 96.75% | 3.25% |
| All Indica | 794 | 95.59% | 4.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205809966 | G->A | LOC_Os12g10800(LOC_Os12g10800.1) | INTRON |