Detailed information of SNP:
|
SNP ID:
sf1205858074(Gbrowse)
Chromosome: chr12 Position: 5858074 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 79.36% | 20.64% |
| All Indica | 799 | 68.71% | 31.29% |
| All Japonica | 494 | 92.91% | 7.09% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 23.00% | 77.00% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 332 | 90.96% | 9.04% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205858074 | T->C | LOC_Os12g10870(LOC_Os12g10870.1) | Non-Synonymous SNP |