Detailed information of SNP:
|
SNP ID:
sf1205862424(Gbrowse)
Chromosome: chr12 Position: 5862424 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 71.00% | 29.00% |
| All Indica | 799 | 52.19% | 47.81% |
| All Japonica | 495 | 96.57% | 3.43% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 72.27% | 27.73% |
| Indica II | 213 | 11.27% | 88.73% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205862424 | C->G | INTERGENIC | None |