Detailed information of SNP:
|
SNP ID:
sf1205875710(Gbrowse)
Chromosome: chr12 Position: 5875710 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 89.05% | 10.95% |
| All Indica | 797 | 85.57% | 14.43% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 81.55% | 18.45% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205875710 | T->C | INTERGENIC | None |