Detailed information of SNP:
|
SNP ID:
sf1205883401(Gbrowse)
Chromosome: chr12 Position: 5883401 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1331 | 82.12% | 17.88% |
| All Indica | 727 | 76.75% | 23.25% |
| All Japonica | 485 | 87.42% | 12.58% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 325 | 71.08% | 28.92% |
| Indica II | 210 | 82.86% | 17.14% |
| Indica Intermediate | 192 | 79.69% | 20.31% |
| Temperate Japonica | 331 | 85.80% | 14.20% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 64 | 82.81% | 17.19% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205883401 | T->C | LOC_Os12g10890(LOC_Os12g10890.1) | Synonymous |