Detailed information of SNP:
|
SNP ID:
sf1205897425(Gbrowse)
Chromosome: chr12 Position: 5897425 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 93.20% | 6.80% |
| All Indica | 741 | 88.53% | 11.47% |
| All Japonica | 493 | 99.39% | 0.61% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 356 | 90.45% | 9.55% |
| Indica II | 195 | 88.72% | 11.28% |
| Indica Intermediate | 190 | 84.74% | 15.26% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 6 | 66.67% | 33.33% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205897425 | G->A | LOC_Os12g10900(LOC_Os12g10900.1) | SNPs that introduce stop codons |